SettingsSystems biology
Biochemical systems theory
Biochemical systems theory is a mathematical modelling framework for biochemical systems, based on ordinary differential equations (ODE), in which biochemical processes are represented using ...
Biochemical systems theory is a mathematical modelling framework for biochemical systems, based on ordinary differential equations (ODE), in which biochemical processes are represented using ...
BioGRID
The Biological General Repository for Interaction Datasets (BioGRID) is a curated biological database of protein-protein and genetic interactions created in 2003 (originally referred to as...
The Biological General Repository for Interaction Datasets (BioGRID) is a curated biological database of protein-protein and genetic interactions created in 2003 (originally referred to as...
Biological network
A biological network is any network that applies to biological systems.
A biological network is any network that applies to biological systems.
Biological systems engineering
Biological Systems Engineering (BSE) is a broad-based engineering discipline with particular emphasis on biology and chemistry.
Biological Systems Engineering (BSE) is a broad-based engineering discipline with particular emphasis on biology and chemistry.
BioModels Database
BioModels Database is a free and open-source database for storing, exchanging and retrieving published quantitative models of biological interest.
BioModels Database is a free and open-source database for storing, exchanging and retrieving published quantitative models of biological interest.
BioPAX
BioPAX is a RDF/OWL-based standard language to represent biological pathways at the molecular and cellular level.
BioPAX is a RDF/OWL-based standard language to represent biological pathways at the molecular and cellular level.
Biopunk
Biopunk (a portmanteau synthesizing "biotechnology" and "punk") is a technoprogressive movement advocating open access to genetic information.
Biopunk (a portmanteau synthesizing "biotechnology" and "punk") is a technoprogressive movement advocating open access to genetic information.
Biosimulation
Biosimulation is a general term describing computer-aided mathematical simulation of biological processes and systems and thus is an integral part of systems biology.
Biosimulation is a general term describing computer-aided mathematical simulation of biological processes and systems and thus is an integral part of systems biology.
BISC (database)
Binary subcomplexes in proteins database (BISC) is a protein-protein interaction database about binary subcomplexes.
Binary subcomplexes in proteins database (BISC) is a protein-protein interaction database about binary subcomplexes.
BMC Systems Biology
BMC Systems Biology is an open access peer-reviewed scientific journal that covers research in systems biology.
BMC Systems Biology is an open access peer-reviewed scientific journal that covers research in systems biology.
Cell signaling
Cell signaling is part of a complex system of communication that governs basic cellular activities and coordinates cell actions.
Cell signaling is part of a complex system of communication that governs basic cellular activities and coordinates cell actions.
Cellular model
Creating a cellular model has been a particularly challenging task of systems biology and mathematical biology.
Creating a cellular model has been a particularly challenging task of systems biology and mathematical biology.
Centre for Plant Integrative Biology
The Centre for Plant Integrative Biology (CPIB) at the University of Nottingham, UK, is one of six UK centres for integrative systems biology supported by BBSRC and EPSRC. It is located at the U...
The Centre for Plant Integrative Biology (CPIB) at the University of Nottingham, UK, is one of six UK centres for integrative systems biology supported by BBSRC and EPSRC. It is located at the U...
ConsensusPathDB
The ConsensusPathDB is a molecular functional interaction database, integrating information on protein interactions, signaling, metabolism and gene regulation in humans.
The ConsensusPathDB is a molecular functional interaction database, integrating information on protein interactions, signaling, metabolism and gene regulation in humans.
COPASI
COPASI is an open source software application for solving mathematical models of biological processes.
COPASI is an open source software application for solving mathematical models of biological processes.
COSBI
COSBI is The Microsoft Research - University of Trento Centre for Computational and Systems Biology.
COSBI is The Microsoft Research - University of Trento Centre for Computational and Systems Biology.
Cytoscape
Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression profiles and other state data.
Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression profiles and other state data.
DAVID (bioinformatics tool)
DAVID (the Database for Annotation, Visualization and Integrated Discovery) is a free online bioinformatics resource developed by the Laboratory of Immunopathogenes...
DAVID (the Database for Annotation, Visualization and Integrated Discovery) is a free online bioinformatics resource developed by the Laboratory of Immunopathogenes...
De novo transcriptome assembly
De novo transcriptome assembly is the method of creating a transcriptome without the aid of a reference genome.
De novo transcriptome assembly is the method of creating a transcriptome without the aid of a reference genome.
Degeneracy (biology)
Within biological systems, degeneracy refers to circumstances where structurally dissimilar components/modules/pathways can perform similar functions (i.e.
Within biological systems, degeneracy refers to circumstances where structurally dissimilar components/modules/pathways can perform similar functions (i.e.
Department of Systems Biology
Department of Systems Biology or DTU Systems Biology is a department within the Technical University of Denmark (DTU) focusing on Systems biology and biotechnology.
Department of Systems Biology or DTU Systems Biology is a department within the Technical University of Denmark (DTU) focusing on Systems biology and biotechnology.
DIMA (database)
The Domain Interaction MAp is a database of predicted and known interactions between protein domains.
The Domain Interaction MAp is a database of predicted and known interactions between protein domains.
Dynamic energy budget
The Dynamic Energy Budget (DEB) theory aims to identify simple quantitative rules for the organization of metabolism of individual organisms that can be understood from basic first principles.
The Dynamic Energy Budget (DEB) theory aims to identify simple quantitative rules for the organization of metabolism of individual organisms that can be understood from basic first principles.
ESIGNET Project
The ESIGNET Project (Evolving Cell Signaling Networks in Silicon) is an interdisciplinary research consortium that is supported and funded by the European Commission.
The ESIGNET Project (Evolving Cell Signaling Networks in Silicon) is an interdisciplinary research consortium that is supported and funded by the European Commission.
Extrapolation based molecular systems biology
Extrapolation based Molecular Systems Biology is the utilization of molecular data from one or many sub-cellular levels to indirectly infer the remaining components of a sub-cellular system via ...
Extrapolation based Molecular Systems Biology is the utilization of molecular data from one or many sub-cellular levels to indirectly infer the remaining components of a sub-cellular system via ...
Gemini Somatics
Gemini Somatics is a biotechnology company located in Riverside, Oregon, working primarily in the field of synthetic somatology, which is an emerging science developed by Dr Edward Darmos.
Gemini Somatics is a biotechnology company located in Riverside, Oregon, working primarily in the field of synthetic somatology, which is an emerging science developed by Dr Edward Darmos.
Gene regulatory network
A gene regulatory network or genetic regulatory network (GRN) is a collection of DNA segments in a cell which interact with each other indirectly (through their RNA and protein expression ...
A gene regulatory network or genetic regulatory network (GRN) is a collection of DNA segments in a cell which interact with each other indirectly (through their RNA and protein expression ...
Genenetwork
GeneNetwork is a database and open source bioinformatics software resource for systems genetics.
GeneNetwork is a database and open source bioinformatics software resource for systems genetics.
GenMAPP
GenMAPP (Gene Map Annotator and Pathway Profiler) is a free, open-source bioinformatics software tool designed to visualize and analyze genomic data in the context of pathways (metabolic, signal...
GenMAPP (Gene Map Annotator and Pathway Profiler) is a free, open-source bioinformatics software tool designed to visualize and analyze genomic data in the context of pathways (metabolic, signal...
GenoCAD
GenoCAD is an open source web application to design DNA constructs for genetic engineering using a rule-based methodology.
GenoCAD is an open source web application to design DNA constructs for genetic engineering using a rule-based methodology.
HitPredict
HitPredict is a database of high confidence protein-protein interactions.
HitPredict is a database of high confidence protein-protein interactions.
Human ecosystem
Human ecosystems are complex cybernetic systems that are increasingly being used by ecological anthropologists and other scholars to examine the ecological aspects of human communities in a way...
Human ecosystems are complex cybernetic systems that are increasingly being used by ecological anthropologists and other scholars to examine the ecological aspects of human communities in a way...
Institute for Systems Biology
The Institute for Systems Biology is a non-profit research institution, located in Seattle, Washington, United States.
The Institute for Systems Biology is a non-profit research institution, located in Seattle, Washington, United States.
Interaction network
Interaction network is a network of nodes that are connected by features.
Interaction network is a network of nodes that are connected by features.
Interactome
In molecular biology an Interactome is defined as the whole set of molecular interactions in cells.
In molecular biology an Interactome is defined as the whole set of molecular interactions in cells.
Interactomics
Interactomics is a discipline at the intersection of bioinformatics and biology that deals with studying both the interactions and the consequences of those interactions between and among protei...
Interactomics is a discipline at the intersection of bioinformatics and biology that deals with studying both the interactions and the consequences of those interactions between and among protei...
Interferomics
Interferomics is a the study of biological events that take place post-transcriptomic pre-translatomically.
Interferomics is a the study of biological events that take place post-transcriptomic pre-translatomically.
KEGG
KEGG is a collection of online databases dealing with genomes, enzymatic pathways, and biological chemicals.
KEGG is a collection of online databases dealing with genomes, enzymatic pathways, and biological chemicals.
Leibniz (unit)
Leibniz is A leibniz is a unit used in systems biology and in mathematics.
Leibniz is A leibniz is a unit used in systems biology and in mathematics.
Living systems
Living systems are open self-organizing living things that interact with their environment.
Living systems are open self-organizing living things that interact with their environment.
Luxembourg Centre for Systems Biomedicine
The Luxembourg Centre for Systems Biomedicine is one of two interdisciplinary research centres at the University of Luxembourg.
The Luxembourg Centre for Systems Biomedicine is one of two interdisciplinary research centres at the University of Luxembourg.
Manchester Centre for Integrative Systems Biology
The Manchester Centre for Integrative Systems Biology (MCISB) at the University of Manchester, England has been awarded £6.4M by the BBSRC and EPSRC to pioneer the development of new experimenta...
The Manchester Centre for Integrative Systems Biology (MCISB) at the University of Manchester, England has been awarded £6.4M by the BBSRC and EPSRC to pioneer the development of new experimenta...
Metabolic control analysis
Metabolic control analysis (MCA) is a mathematical framework for describing metabolic, signaling and genetic pathways.
Metabolic control analysis (MCA) is a mathematical framework for describing metabolic, signaling and genetic pathways.
Metabolic flux analysis
Metabolic flux analysis is an analysis technique similar to Flux Balance Analysis used to determine the rate at which a metabolite is produced during a bioprocess.
Metabolic flux analysis is an analysis technique similar to Flux Balance Analysis used to determine the rate at which a metabolite is produced during a bioprocess.
Metabolic network modelling
Metabolic network reconstruction and simulation allows for an in depth insight into comprehending the molecular mechanisms of a particular organism, especially correlating the genome with molecu...
Metabolic network reconstruction and simulation allows for an in depth insight into comprehending the molecular mechanisms of a particular organism, especially correlating the genome with molecu...
Metabolite pool
Metabolite pool is a collective term for all of the substances involved in the metabolic process in a biological system.
Metabolite pool is a collective term for all of the substances involved in the metabolic process in a biological system.
Metabolome
Metabolome refers to the complete set of small-molecule metabolites (such as metabolic intermediates, hormones and other signalling molecules, and secondary metabolites) to be found within a bio...
Metabolome refers to the complete set of small-molecule metabolites (such as metabolic intermediates, hormones and other signalling molecules, and secondary metabolites) to be found within a bio...
Metabolomics
Metabolomics is the scientific study of chemical processes involving metabolites.
Metabolomics is the scientific study of chemical processes involving metabolites.
Metallome
The term metallome has been introduced by R.J.P. Williams by analogy with proteome as distribution of free metal ions in every one of cellular compartments.
The term metallome has been introduced by R.J.P. Williams by analogy with proteome as distribution of free metal ions in every one of cellular compartments.
Minimum Information About a Simulation Experiment
The Minimum Information About a Simulation Experiment (MIASE) is an effort to list the common set of information a modeller needs to provide in order to enable the execution and reproducti...
The Minimum Information About a Simulation Experiment (MIASE) is an effort to list the common set of information a modeller needs to provide in order to enable the execution and reproducti...
Minimum Information Required in the Annotation of Models
MIRIAM (Minimum Information Required in the Annotation of Models), is an effort to standardize the annotation and curation process of quantitative models of biological systems.
MIRIAM (Minimum Information Required in the Annotation of Models), is an effort to standardize the annotation and curation process of quantitative models of biological systems.
Minimum information required in the annotation of models
MIRIAM is a community-level effort to standardize the annotation and curation processes of quantitative models of biological systems.
MIRIAM is a community-level effort to standardize the annotation and curation processes of quantitative models of biological systems.
Modelling biological systems
Modelling biological systems is a significant task of systems biology and mathematical biology.
Modelling biological systems is a significant task of systems biology and mathematical biology.
Molecular Systems Biology
Molecular Systems Biology is a peer-reviewed scientific journal publishing research within systems biology at the molecular level, including genomics, proteomics, metabolomics, microbial sys...
Molecular Systems Biology is a peer-reviewed scientific journal publishing research within systems biology at the molecular level, including genomics, proteomics, metabolomics, microbial sys...
Network theory of aging
The network theory of aging supports the idea that multiple connected processes contribute to the biology of aging.
The network theory of aging supports the idea that multiple connected processes contribute to the biology of aging.
Phenome
A phenome is the set of all phenotypes expressed by a cell, tissue, organ, organism, or species.
A phenome is the set of all phenotypes expressed by a cell, tissue, organ, organism, or species.
ProtCID
The Protein Common Interface Database is a database of similar protein-protein interfaces in crystal structures of homologous proteins.
The Protein Common Interface Database is a database of similar protein-protein interfaces in crystal structures of homologous proteins.
Protein-DNA interaction
Protein–DNA interactions are when a protein binds a molecule of DNA, often to regulate the biological function of DNA, usually the expression of a gene.
Protein–DNA interactions are when a protein binds a molecule of DNA, often to regulate the biological function of DNA, usually the expression of a gene.
Protein-protein interaction
Protein–protein interactions occur when two or more proteins bind together, often to carry out their biological function.
Protein–protein interactions occur when two or more proteins bind together, often to carry out their biological function.
Protein–protein interaction
Protein–protein interactions occur when two or more proteins bind together, often to carry out their biological function.
Protein–protein interactions occur when two or more proteins bind together, often to carry out their biological function.
Regulome
Regulome refers to the whole set of regulation components in a cell.
Regulome refers to the whole set of regulation components in a cell.
Rule-based modeling
Rule-based modeling is a modeling approach that uses a set of rules that implies a model.
Rule-based modeling is a modeling approach that uses a set of rules that implies a model.
SABIO-Reaction Kinetics Database
SABIO-RK is a web-accessible database storing information about biochemical reactions and their kinetic properties.
SABIO-RK is a web-accessible database storing information about biochemical reactions and their kinetic properties.
SBML
The Systems Biology Markup Language (SBML) is a representation format, based on XML, for communicating and storing computational models of biological processes.
The Systems Biology Markup Language (SBML) is a representation format, based on XML, for communicating and storing computational models of biological processes.
Simulated growth of plants
The simulated growth of plants is a significant task in of systems biology and mathematical biology, which seeks to reproduce plant morphology with computer software.
The simulated growth of plants is a significant task in of systems biology and mathematical biology, which seeks to reproduce plant morphology with computer software.
Society for Mathematical Biology
The Society for Mathematical Biology is an international association co-founded in 1972 in USA by Drs.George Karreman, Herbert Daniel Landahl and by Anthony Bartholomay for the furtherance of jo...
The Society for Mathematical Biology is an international association co-founded in 1972 in USA by Drs.George Karreman, Herbert Daniel Landahl and by Anthony Bartholomay for the furtherance of jo...
STRING
In molecular biology, STRING (Search Tool for the Retrieval of Interacting Genes/Proteins) is a database and web resource of known and predicted protein-protein interactions.
In molecular biology, STRING (Search Tool for the Retrieval of Interacting Genes/Proteins) is a database and web resource of known and predicted protein-protein interactions.
Synthetic biology
Synthetic biology is a new area of biological research and technology that combines science and engineering.
Synthetic biology is a new area of biological research and technology that combines science and engineering.
Systems biology
Systems biology is a term used to describe a number of trends in bioscience research, and a movement which draws on those trends.
Systems biology is a term used to describe a number of trends in bioscience research, and a movement which draws on those trends.
Systems Biology Graphical Notation
The Systems Biology Graphical Notation (SBGN) is a standard graphical representation crafted over several years by a community of biochemists, modelers and computer scientists.
The Systems Biology Graphical Notation (SBGN) is a standard graphical representation crafted over several years by a community of biochemists, modelers and computer scientists.
Systems Biology Ireland
Systems Biology Ireland (SBI) is a Science Foundation Ireland (SFI) funded CSET research initiative between the University College Dublin (UCD) and the National University of Ireland, Galway (NU...
Systems Biology Ireland (SBI) is a Science Foundation Ireland (SFI) funded CSET research initiative between the University College Dublin (UCD) and the National University of Ireland, Galway (NU...
Systems Biology Ontology
The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling.
The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling.
Systems biomedicine
Systems Biomedicine is the application of Systems Biology to the understanding and modulation of developmental and pathological processes in humans, and in animal and cellular models.
Systems Biomedicine is the application of Systems Biology to the understanding and modulation of developmental and pathological processes in humans, and in animal and cellular models.
Systems immunology
Systems immunology is a recent research field that, under the larger umbrella of systems biology, aims to study the immune system in the more integrated perspective on how entities and players p...
Systems immunology is a recent research field that, under the larger umbrella of systems biology, aims to study the immune system in the more integrated perspective on how entities and players p...
Systems microbiology
Systems microbiology is the combination of systems biology and microbiology devoted to the study of the dynamic interactions of more than one component in a microbiological system in order to un...
Systems microbiology is the combination of systems biology and microbiology devoted to the study of the dynamic interactions of more than one component in a microbiological system in order to un...
Systems neuroscience
Systems neuroscience is a subdiscipline of neuroscience which studies the function of neural circuits and systems.
Systems neuroscience is a subdiscipline of neuroscience which studies the function of neural circuits and systems.
TopFIND
TopFIND is the Termini oriented protein Function Inferred Database (TopFIND) is an integrated knowledgebase focused on protein termini, their formation ...
TopFIND is the Termini oriented protein Function Inferred Database (TopFIND) is an integrated knowledgebase focused on protein termini, their formation ...
Two-hybrid screening
Two-hybrid screening (also known as yeast two-hybrid system or Y2H) is a molecular biology technique used to discover protein–protein interactions and protein–DNA interactions by tes...
Two-hybrid screening (also known as yeast two-hybrid system or Y2H) is a molecular biology technique used to discover protein–protein interactions and protein–DNA interactions by tes...
Virtual Cell
Virtual Cell (VCell) is an open-source software platform for modeling and simulation of living organisms, primarily cells.
Virtual Cell (VCell) is an open-source software platform for modeling and simulation of living organisms, primarily cells.
Wagner's gene network model
Wagner's gene network model is a computational model of manmade water network faux modle, which explicitly modeled the developmental and evolutionary process of genetic regulatory networks.
Wagner's gene network model is a computational model of manmade water network faux modle, which explicitly modeled the developmental and evolutionary process of genetic regulatory networks.