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  1. Only showing results from mapping-commons.github.io

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  2. mapping-commons.github.io

    The Simple Standard for Sharing Ontological Mappings (SSSOM) is a community-driven standard designed to facilitate the exchange and integration of semantic entity mappings.
  3. mapping-commons.github.io

    The Simple Standard for Sharing Ontology Mappings (SSSOM) addresses these problems by defining a catalog of metadata terms to describe mappings. Both individual mappings and sets of mappings can be described, enabling provenance and metadata to be captured on multiple levels.
  4. mapping-commons.github.io

    Introduction to mapping curation with SSSOM Mappings between entities from ontologies, terminologies and databases are created for many reasons (data integration, knowledge graphs) and maintained in many different ways (automated matching, manual curation).
  5. mapping-commons.github.io

    It is divided in two sections covering the two different components of the standard: the specification for the data model, to manipulate SSSOM mappings and mapping sets in your programs; the specification for the serialisation formats, to read, write, and exchange SSSOM mapping sets.
  6. mapping-commons.github.io

    Those slots are mandatory (including the mapping_justification slot: the SSSOM standard posits that there can be no mapping without some form of justification) and an implementation MUST NOT allow the creation of a mapping object that does not have a value for any one of them. Other slots are intended to provide further details about a mapping.
  7. mapping-commons.github.io

    Tutorials and Guides Mapping curation with SSSOM Are these two entities the same? A guide.. An important tutorial that explains that it is not directly possible to determine if two things are the same across ontologies, but its still worth doing when explicitly recording the rationale. Linking across vocabularies: Semantic Entity Matching: Entity matching is the process of establishing a link ...
  8. mapping-commons.github.io

    While the SSSOM model is quite general and mappings can be shared in different formats, the most common format is the SSSOM/TSV format. Here is a tabular representation of some example mappings for illustration purposes:
  9. mapping-commons.github.io

    Who is responsible for the conversion into SSSOM - the primary developers of an artefact, or a mapping commons? Like with everything on the web, the closer to the source the SSSOM mappings are curated, the better. Ideally, mappings are maintained as part of ontology release pipelines or by primary mapping creators, rather than derived from a secondary source such as a database, further ...
  10. mapping-commons.github.io

    The SSSOM toolkit (STK) already implements a number of commonly use mapping formats: OWL Ontologies Alignment API Format (format used by the Ontology Alignment Evaluation Initiative, OAEI) Parsers for SNOMED mapping format and FHIR Concept Map are in the making, June 2022. Here we use Uberon, an anatomy ontology in the biomedical domain.
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