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  1. ncbi.nlm.nih.gov

    National Center for Biotechnology Information

    https://www.ncbi.nlm.nih.gov › pmc › articles › PMC9216545

    A simple standard for mapping metadata and a simple table format have been instrumental for collaborating with groups such as OpenTargets, IMPC , MGI and the Center for Cancer Data Harmonization [CCDH ] to build better mapping sets, for example by sharing and editing mapping sets directly through Google Sheets. Developing a metadata standard is ...
    Publication:Database (Oxford). 2022; 2022: baac035.
  2. pubmed.ncbi.nlm.nih.gov

    A Simple Standard for Sharing Ontological Mappings (SSSOM) Database (Oxford). 2022 May 25;2022:baac035. doi: 10.1093/database/baac035. ... We have developed the Simple Standard for Sharing Ontological Mappings (SSSOM) which addresses these problems by: (i) Introducing a machine-readable and extensible vocabulary to describe metadata that makes ...
  3. Despite progress in the development of standards for describing and exchanging scientific information, the lack of easy-to-use standards for mapping between different representations of the same or similar objects in different databases poses a major impediment to data integration and interoperability. Mappings often lack the metadata needed to be correctly interpreted and applied. For example ...
  4. SSSOM is a Simple Standard for Sharing Ontological Mappings, providing. a TSV-based representation for ontology term mappings; a comprehensive set of standard metadata elements to describe mappings and; a standard translation between the TSV and the Web Ontology Language (OWL).
  5. In this section we describe the SSSOM standard in four subsections: The core data model and the metadata elements included in SSSOM How SSSOM is exchanged, including the canonical simple tabular serialization Governance and sustainability of the standard The emerging software ecosystem for working with SSSOM mappings
  6. mapping-commons.github.io

    The Simple Standard for Sharing Ontological Mappings (SSSOM) is a community-driven standard designed to facilitate the exchange and integration of semantic entity mappings. As data interoperability becomes increasingly crucial across various domains, SSSOM provides a standardized format to share mappings, enabling researchers and developers to ...
  7. A Simple Standard for Sharing Ontological Mappings (SSSOM) Nicolas Matentzoglu, James P. Balhoff , Susan M. Bello , Chris Bizon , Matthew Brush, 2 3 2 Tiffany J. Callahan4, Christopher G Chute 5, William D. Duncan 6, Chris T. Evelo 7, Davera Gabriel 5, John Graybeal 8, Alasdair Gray 9, Benjamin M. Gyori 10, Melissa Haendel 4, Henriette Harmse
  8. mapping-commons.github.io

    The Simple Standard for Sharing Ontology Mappings (SSSOM) addresses these problems by defining a catalog of metadata terms to describe mappings. Both individual mappings and sets of mappings can be described, enabling provenance and metadata to be captured on multiple levels. SSSOM interoperates with existing methods for the specification of ...
  9. mapping-commons.github.io

    How to create an SSSOM mapping set from scratch. SSSOM mapping sets can be created as part of automated processes, like ontology matchers, or manually by ontology curators. While there is overlap, it makes sense to look at both cases separately. To remind yourself why you should build SSSOM mapping sets in the first place, please refer to the FAQ.
  10. researchgate.net

    We have developed the Simple Standard for Sharing Ontological Mappings (SSSOM) which addresses these problems by: (i) Introducing a machine-readable and extensible vocabulary to describe metadata ...

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