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  1. Cross-linking of amino acids in close proximity on protein surfaces, followed by mass spectrometry, provides useful structural information. This protocol for using XlinkX can be applied for ...
    Author:Oleg Klykov, Barbara Steigenberger, Sibel Pektaş, Domenico Fasci, Albert J R Heck, Richard A Schelte...Published:2018
  2. pubmed.ncbi.nlm.nih.gov

    Cross-linking mass spectrometry (XL-MS) has received considerable interest, owing to its potential to investigate protein-protein interactions (PPIs) in an unbiased fashion in complex protein mixtures. ... Efficient and robust proteome-wide approaches for cross-linking mass spectrometry Nat Protoc. 2018 Dec;13 (12 ...
    Author:Oleg Klykov, Barbara Steigenberger, Sibel Pektaş, Domenico Fasci, Albert J R Heck, Richard A Schelte...Published:2018
  3. experiments.springernature.com

    Yu, C. et al. Developing a multiplexed quantitative cross-linking mass spectrometry platform for comparative structural analysis of protein complexes. Anal. Chem. 88, 10301-10308 (2016). Rampler, E. et al. Comprehensive cross-linking mass spectrometry reveals parallel orientation and flexible conformations of plant HOP2-MND1. J.
  4. semanticscholar.org

    This protocol produces data of high confidence and can be performed within ~10 d, including structural investigations, and cross-linking of amino acids in close proximity on protein surfaces, followed by mass spectrometry, provides useful structural information. Cross-linking mass spectrometry (XL-MS) has received considerable interest, owing to its potential to investigate protein-protein ...
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  6. Efficient and robust proteome-wide approaches for crosslinking mass spectrometry ... Biomolecular Mass Spectrometry and Proteomics group, Utrecht University (lab head) Submission Date. 12/12/2017 ... Des: de Graaf SC, Klykov O, Van den Toorn H, Scheltema RA. Cross-ID: Analysis and Visualization of Complex XL-MS Driven Protein Interaction ...
  7. ncbi.nlm.nih.gov

    National Center for Biotechnology Information

    https://www.ncbi.nlm.nih.gov › pmc › articles › PMC7442761

    Cross-linking/mass spectrometry (XL-MS) has undergone an impressive transformation during the last two decades, developing from a niche technique to a generally accepted method for protein structure analysis. ... Efficient and robust proteome-wide approaches for cross-linking mass spectrometry. Nat Protoc. 2018; 13 (12):2964-2990. doi: 10. ...
  8. researchgate.net

    In recent years, protein structure analysis approaches using top-down mass spectrometry, native mass spectrometry, and cross-linking mass spectrometry, among others, have been developed, and these ...
  9. pubmed.ncbi.nlm.nih.gov

    Advancing data analysis tools for proteome-wide cross-linking mass spectrometry (XL-MS) requires ground-truth standards that mimic biological complexity. ... Proteome-scale recombinant standards and a robust high-speed search engine to advance cross-linking MS-based interactomics Nat Methods. 2024 Dec;21(12):2327-2335. doi: 10.1038/s41592-024 ...
  10. pubmed.ncbi.nlm.nih.gov

    Our approach is based on the application of mass spectrometry (MS)-cleavable cross-linkers, sequential collision-induced dissociation (CID)-tandem MS (MS/MS) and electron-transfer dissociation (ETD)-MS/MS acquisitions, and a dedicated search engine, XlinkX, which allows rapid cross-link identification against a complete human proteome database ...

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