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  1. mapping-commons.github.io

    The Simple Standard for Sharing Ontological Mappings (SSSOM) is a community-driven standard designed to facilitate the exchange and integration of semantic entity mappings. As data interoperability becomes increasingly crucial across various domains, SSSOM provides a standardized format to share mappings, enabling researchers and developers to ...
    • Basic Tutorial

      A Simple Standard for Sharing Ontology Mappings (SSSOM) Basic Tutorial Initializing search GitHub A Simple Standard for Sharing Ontology Mappings (SSSOM) ... As FOODON is an ontology, having a mapping to a more specific element (e.g. gala) may help us to find an appropriate mapping for the more general concept ...

    • Introduction

      The Simple Standard for Sharing Ontology Mappings (SSSOM) addresses these problems by defining a catalog of metadata terms to describe mappings. Both individual mappings and sets of mappings can be described, enabling provenance and metadata to be captured on multiple levels. SSSOM interoperates with existing methods for the specification of ...

    • Resources for contributors

      A Simple Standard for Sharing Ontology Mappings (SSSOM) Resources for contributors Initializing search GitHub A Simple Standard for Sharing Ontology Mappings (SSSOM) ... How to use mapping predicates Set up a mapping registry/commons A basic guide for the SSSOM toolkit 5-Star Entity Mappings - Cheatsheet Matching tool implementation guide ...

    • Related documentation

      Related documentation Related documentation. SSSOM Toolkit: A toolkit and library for processing SSSOM files in Python; SSSOM Java: A toolkit and library for processing SSSOM files in Java; Semantic Mapping Vocabulary (SEMAPV): The mapping vocabulary used for mapping justifications and specialised mapping predicates LinkML: The modelling framework used by SSSOM

    • Funding

      The Simple Standard for Sharing Ontological Mappings (SSSOM) is a community-driven project which has received support from many different sources. We list the most important ones in the following. Volunteering efforts. A huge fraction of the work on SSSOM has been done by volunteers without dedicated grant support.

    • FAQ

      The idea of a mapping commons is to provide mappings in a decentralised fashion akin to OBO ontologies. A mapping commons collects mappings relevant to a particular community, either by reference (i.e. pulling in mapping sets already published elsewhere), or directly maintained at the mapping commons .

  2. mapping-commons.github.io

    The Simple Standard for Sharing Ontology Mappings (SSSOM) addresses these problems by defining a catalog of metadata terms to describe mappings. Both individual mappings and sets of mappings can be described, enabling provenance and metadata to be captured on multiple levels. SSSOM interoperates with existing methods for the specification of ...
  3. mapping-commons.github.io

    A Simple Standard for Sharing Ontology Mappings (SSSOM) Basic Tutorial Initializing search GitHub A Simple Standard for Sharing Ontology Mappings (SSSOM) ... As FOODON is an ontology, having a mapping to a more specific element (e.g. gala) may help us to find an appropriate mapping for the more general concept ...
  4. SSSOM is a Simple Standard for Sharing Ontological Mappings, providing. a TSV-based representation for ontology term mappings; a comprehensive set of standard metadata elements to describe mappings and; a standard translation between the TSV and the Web Ontology Language (OWL).
  5. academic.oup.com

    A simple standard for mapping metadata and a simple table format have been instrumental for collaborating with groups such as OpenTargets, IMPC , MGI and the Center for Cancer Data Harmonization [CCDH ] to build better mapping sets, for example by sharing and editing mapping sets directly through Google Sheets. Developing a metadata standard is ...
  6. Download a PDF of the paper titled A Simple Standard for Sharing Ontological Mappings (SSSOM), by Nicolas Matentzoglu and 43 other authors ... the lack of easy-to-use standards for mapping between different representations of the same or similar objects in different databases poses a major impediment to data integration and interoperability ...
  7. Mapping should make use of standard, globally Standard ontology CURIEs like UBERON:0002101 for Identifiers are used without explicitly defined prefixes; 4/24. unambiguous identifiers such as CURIEs or IRIs entities, with prefixes ... A Simple Standard for Sharing Ontological Mappings (SSSOM) [submitted to bioRxiv 10-Dec-2021] ...
  8. The 2nd Mapping Commons Workshop on Simple Standard for Sharing Ontology Mappings [20] was held in Padua, Italy. The workshop was about the limits of the applicability of SSSOM, and ways to work around it. The discussion focussed on four important corner cases: literal mappings (mappings between a literal string and an identifier),
  9. escholarship.org

    We have developed the Simple Standard for Sharing Ontological Mappings (SSSOM) which addresses these problems by: (i) Introducing a machine-readable and extensible vocabulary to describe metadata that makes imprecision, inaccuracy and incompleteness in mappings explicit. ... the lack of easy-to-use standards for mapping between different ...
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