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  1. mapping-commons.github.io

    The Simple Standard for Sharing Ontology Mappings (SSSOM) addresses these problems by defining a catalog of metadata terms to describe mappings. Both individual mappings and sets of mappings can be described, enabling provenance and metadata to be captured on multiple levels. SSSOM interoperates with existing methods for the specification of ...
    • Basic Tutorial

      A Simple Standard for Sharing Ontology Mappings (SSSOM) Basic Tutorial Initializing search GitHub A Simple Standard for Sharing Ontology Mappings (SSSOM) ... As FOODON is an ontology, having a mapping to a more specific element (e.g. gala) may help us to find an appropriate mapping for the more general concept ...

    • GitHub Pages

      The Simple Standard for Sharing Ontological Mappings (SSSOM) is a community-driven standard designed to facilitate the exchange and integration of semantic entity mappings. As data interoperability becomes increasingly crucial across various domains, SSSOM provides a standardized format to share mappings, enabling researchers and developers to ...

  2. mapping-commons.github.io

    The Simple Standard for Sharing Ontological Mappings (SSSOM) is a community-driven standard designed to facilitate the exchange and integration of semantic entity mappings. As data interoperability becomes increasingly crucial across various domains, SSSOM provides a standardized format to share mappings, enabling researchers and developers to ...
  3. mapping-commons.github.io

    A Simple Standard for Sharing Ontology Mappings (SSSOM) Basic Tutorial Initializing search GitHub A Simple Standard for Sharing Ontology Mappings (SSSOM) ... As FOODON is an ontology, having a mapping to a more specific element (e.g. gala) may help us to find an appropriate mapping for the more general concept ...
  4. academic.oup.com

    A simple standard for mapping metadata and a simple table format have been instrumental for collaborating with groups such as OpenTargets, IMPC , MGI and the Center for Cancer Data Harmonization [CCDH ] to build better mapping sets, for example by sharing and editing mapping sets directly through Google Sheets. Developing a metadata standard is ...
  5. SSSOM is a Simple Standard for Sharing Ontological Mappings, providing. a TSV-based representation for ontology term mappings; a comprehensive set of standard metadata elements to describe mappings and; a standard translation between the TSV and the Web Ontology Language (OWL).
  6. The 2nd Mapping Commons Workshop on Simple Standard for Sharing Ontology Mappings [20] was held in Padua, Italy. The workshop was about the limits of the applicability of SSSOM, and ways to work around it. The discussion focussed on four important corner cases: literal mappings (mappings between a literal string and an identifier),
  7. berkeleybop.github.io

    Implementing open and community-driven collaborative workflows designed to evolve the standard continuously to address changing requirements and mapping practices. Providing reference tools and software libraries for working with the standard. Publication: Matentzoglu, N., et al. (2022). A Simple Standard for Sharing Ontological Mappings (SSSOM).
  8. A Simple Standard for Sharing Ontological Mappings (SSSOM) Nicolas Matentzoglu1, ... standard format, with full metadata Mapping files exchanged via email Un amb i g u o u s i d en ti fi ers Mapping should make use of standard, globally Standard ontology CURIEs like UBERON:0002101 for Identifiers are used
  9. Download PDF Abstract: Despite progress in the development of standards for describing and exchanging scientific information, the lack of easy-to-use standards for mapping between different representations of the same or similar objects in different databases poses a major impediment to data integration and interoperability. Mappings often lack the metadata needed to be correctly interpreted ...
  10. pubmed.ncbi.nlm.nih.gov

    Despite progress in the development of standards for describing and exchanging scientific information, the lack of easy-to-use standards for mapping between different representations of the same or similar objects in different databases poses a major impediment to data integration and interoperabili …

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