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  1. mapping-commons.github.io

    The Simple Standard for Sharing Ontological Mappings (SSSOM) is a community-driven standard designed to facilitate the exchange and integration of semantic entity mappings. As data interoperability becomes increasingly crucial across various domains, SSSOM provides a standardized format to share mappings, enabling researchers and developers to ...
    • Basic Tutorial

      Ontology alignment is the process of determining correspondences between ontological concepts. The usage of "alignment", "matching" and "mapping" is fuzzy in practice. From the perspective of SSSOM, alignment usually involves determining all (or a more or less complete set of) correspondences between ontological concepts of two or more source ...

    • Introduction

      The Simple Standard for Sharing Ontology Mappings (SSSOM) addresses these problems by defining a catalog of metadata terms to describe mappings. Both individual mappings and sets of mappings can be described, enabling provenance and metadata to be captured on multiple levels. SSSOM interoperates with existing methods for the specification of ...

    • Resources for contributors

      A Simple Standard for Sharing Ontology Mappings (SSSOM) GitHub Home Introduction Specification Specification Introduction Data model Data model Introduction Applying Chaining Rules LinkML documentation Serialisations Serialisations Introduction ...

    • Related documentation

      A Simple Standard for Sharing Ontology Mappings (SSSOM) GitHub Home Introduction Specification Specification Introduction Data model Data model Introduction Applying Chaining Rules LinkML documentation Serialisations Serialisations Introduction ...

    • Funding

      The Simple Standard for Sharing Ontological Mappings (SSSOM) is a community-driven project which has received support from many different sources. We list the most important ones in the following. Volunteering efforts. A huge fraction of the work on SSSOM has been done by volunteers without dedicated grant support.

    • FAQ

      Ideally, mappings are maintained as part of ontology release pipelines or by primary mapping creators, rather than derived from a secondary source such as a database, further downstream. The reason for this is that ideally, we would want mappings to be reviewable and editable in much the same way as open ontologies, offering issue trackers and ...

  2. mapping-commons.github.io

    The Simple Standard for Sharing Ontology Mappings (SSSOM) addresses these problems by defining a catalog of metadata terms to describe mappings. Both individual mappings and sets of mappings can be described, enabling provenance and metadata to be captured on multiple levels. SSSOM interoperates with existing methods for the specification of ...
  3. mapping-commons.github.io

    Ontology alignment is the process of determining correspondences between ontological concepts. The usage of "alignment", "matching" and "mapping" is fuzzy in practice. From the perspective of SSSOM, alignment usually involves determining all (or a more or less complete set of) correspondences between ontological concepts of two or more source ...
  4. SSSOM is a Simple Standard for Sharing Ontological Mappings, providing. a TSV-based representation for ontology term mappings; a comprehensive set of standard metadata elements to describe mappings and; a standard translation between the TSV and the Web Ontology Language (OWL).
  5. berkeleybop.github.io

    Implementing open and community-driven collaborative workflows designed to evolve the standard continuously to address changing requirements and mapping practices. Providing reference tools and software libraries for working with the standard. Publication: Matentzoglu, N., et al. (2022). A Simple Standard for Sharing Ontological Mappings (SSSOM).
  6. A Simple Standard for Sharing Ontological Mappings (SSSOM) Nicolas Matentzoglu, James P. Balhoff , Susan M. Bello , Chris Bizon , Matthew Brush, 2 3 2 Tiffany J. Callahan4, Christopher G Chute 5, William D. Duncan 6, Chris T. Evelo 7, Davera Gabriel 5, John Graybeal 8, Alasdair Gray 9, Benjamin M. Gyori 10, Melissa Haendel 4, Henriette Harmse
  7. standard, globally Standard ontology CURIEs like UBERON:0002101 for Identifiers are used without explicitly defined prefixes; 4/24. unambiguous identifiers such as CURIEs or IRIs entities, with prefixes registered in a registry ... A Simple Standard for Sharing Ontological Mappings (SSSOM) [submitted to bioRxiv 10-Dec-2021] ...
  8. pubmed.ncbi.nlm.nih.gov

    We have developed the Simple Standard for Sharing Ontological Mappings (SSSOM) which addresses these problems by: (i) Introducing a machine-readable and extensible vocabulary to describe metadata that makes imprecision, inaccuracy and incompleteness in mappings explicit. (ii) Defining an easy-to-use simple table-based format that can be ...
  9. mapping-commons.github.io

    It is divided in two sections covering the two different components of the standard: the specification for the data model , to manipulate SSSOM mappings and mapping sets in your programs; the specification for the serialisation formats , to read, write, and exchange SSSOM mapping sets.
  10. researchgate.net

    We have developed the Simple Standard for Sharing Ontological Mappings (SSSOM) which addresses these problems by: (i) Introducing a machine-readable and extensible vocabulary to describe metadata ...

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