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  2. Jan 29, 2025Seqkmer is a Rust-based tool for processing and analyzing DNA sequences using k-mers. Description. Seqkmer is designed to efficiently handle FASTA files and perform k-mer analysis on DNA sequences. It provides functionality for reading FASTA files, generating k-mers, and potentially other sequence analysis tasks. Features.
  3. 4 days agoSee also: verify-same-kmer-content, sourmash, needletail, kmerutils, bio-seq, matchtigs, rust-bert, gline-rs, shiva, fastlin, sketchlib Lib.rs is an unofficial list of Rust/Cargo crates, created by kornelski.It contains data from multiple sources, including heuristics, and manually curated data.Content of this page is not necessarily endorsed by the authors of the crate.
  4. Apr 9, 2023Repetitive k-mer masking made better - smarter settings and should work better for eukaryotic genomes; shouldn't affect prokaryotic genomes much.--fast and --slow mode added - alias for -c 200 and -c 30 respectively. More non x86_64 builds should work - there was a bug before where skani would be dysfunctional on non x86_64 architectures. It ...
  5. Feb 3, 2025Best for computationally expensive operations (e.g., alignment, k-mer counting) Performance gains depend on the ratio of I/O to processing time; Consider using Arc for processor state with heavy initialization costs; Implementation Notes. Each worker thread receives a Clone of the ParallelProcessor; Thread-local state can be maintained without ...
  6. Aug 21, 2024See also: needletail, kun_peng, perbase, sourmash, kmerutils, bio-seq, lrge, predictosaurus, verify-same-kmer-content, nyx-space, rustynetics Lib.rs is an unofficial list of Rust/Cargo crates, created by kornelski.It contains data from multiple sources, including heuristics, and manually curated data.Content of this page is not necessarily endorsed by the authors of the crate.
  7. v 2.1.9 140 bin+lib # plain-text # k-mer # compression # genome # bio # kmer. structdiff. zero-dependency crate for generating and applying partial diffs between struct instances. v 0.7.1 1.6K # difference # struct # struct-fields # delta-compression # diff # partial # instance. lzma-rs. A codec for LZMA, LZMA2 and XZ written in pure Rust.
  8. Nov 30, 2024153 downloads per month . Custom license. 215KB 4K SLoC simpleaf. simpleaf is a rust framework to make using alevin-fry even simpler.simpleaf encapsulates the process of creating an expanded reference for quantification into a single command (index) and the quantification of a sample into a single command (quant).It also exposes various other functionality, and is actively being developed and ...

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