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  1. mapping-commons.github.io

    A SSSOM mapping set is a collection of SSSOM mappings. Mapping sets can also be associated with metadata, such as license statements, or a description. Example. While the SSSOM model is quite general and mappings can be shared in different formats, the most common format is the SSSOM/TSV format. Here is a tabular representation of some example ...
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  3. mapping-commons.github.io

    As a reminder, a SSSOM mapping comprises three major components: The mapping itself, that is, a triple <subject, predicate, object> that reflects a correspondence of a subject entity, for example a class in an ontology, to an object entity, for example an identifier in some database, via a semantic mapping predicate, such as skos:exactMatch.
  4. SSSOM further provides a standard way to. augment the TSV file with mapping set - level metadata, such as creator_id, mapping_date or license and; translate a SSSOM compliant TSV files into OWL reified axioms. This will allow the easy loading, and merging of SSSOM mapping tables into existing ontologies using standard tools such as ROBOT (under ...
  5. academic.oup.com

    Extracting SSSOM tables from ontologies should make it easier for ontology developers that prefer to curate their mappings as part of their ontology. rdf-matcher is a matcher for RDF vocabularies or OWL ontologies that exports mapping sets as SSSOM tables, including mapping rules . For example, rdf-matcher exports metadata such as mapping tool ...
  6. mapping-commons.github.io

    SSSOM interoperates with existing methods for the specification of mappings, allowing any predicate to be used to describe the nature of each mapping including those from OWL and SKOS. The provenance of mappings - such as whether the mapping was created as the result of a human-curated equivalence match, or a semantic similarity match - is ...
  7. The sssom-py library and CLI tool for processing (converting, validating, etc.) SSSOM mapping files has been migrated to supporting extended prefix maps [8] (EPM) supplied by the Bioregistry [9] for processing SSSOM files, especially during Extract-Transform-Load (ETL) operations. EPMs are a novel way to manage messy identifiers in data that ...
  8. berkeleybop.github.io

    Implementing open and community-driven collaborative workflows designed to evolve the standard continuously to address changing requirements and mapping practices. Providing reference tools and software libraries for working with the standard. Publication: Matentzoglu, N., et al. (2022). A Simple Standard for Sharing Ontological Mappings (SSSOM).
  9. mapping metadata In this section we describe the SSSOM standard in four subsections: The core data model and the metadata elements included in SSSOM How SSSOM is exchanged, including the canonical simple tabular serialization Governance and sustainability of the standard The emerging software ecosystem for working with SSSOM mappings
  10. Download a PDF of the paper titled A Simple Standard for Sharing Ontological Mappings (SSSOM), by Nicolas Matentzoglu and 43 other authors ... the lack of easy-to-use standards for mapping between different representations of the same or similar objects in different databases poses a major impediment to data integration and interoperability ...
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