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  1. Only showing results from berkeleybop.github.io

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  2. berkeleybop.github.io

    Implementing open and community-driven collaborative workflows designed to evolve the standard continuously to address changing requirements and mapping practices. Providing reference tools and software libraries for working with the standard. Publication: Matentzoglu, N., et al. (2022). A Simple Standard for Sharing Ontological Mappings (SSSOM).
  3. berkeleybop.github.io

    Aug 15, 2024SSSOM: Simple Standard for Sharing Ontology Mappings (SSSOM) is a TSV-based representation for ontology term mappings. kg-microbe: Knowledge graph development for microbial data. MONDO: Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world. I've also been involved in developing project templates via cookiecutters:
  4. berkeleybop.github.io

    Apr 3, 2024The Open Biomedical Ontologies (OBO) Foundry is a collective of ontology developers and users committed to collaboration and shared standards. We aim to build a suite of integrated ontologies that are: Logically well formed; Scientifically accurate; Interoperable and interconnected; Non-overlapping; More details can be found on the OBO Homepage ...
  5. berkeleybop.github.io

    The Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world. Numerous sources for disease definitions and data models currently exist, which include HPO, OMIM, SNOMED CT, ICD, PhenoDB, MedDRA, MedGen, ORDO, DO, GARD, etc; however, these sources partially overlap and sometimes conflict, making it difficult to know definitively how they relate to each other.

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