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  1. Only showing results from mapping-commons.github.io

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  2. mapping-commons.github.io

    The Simple Standard for Sharing Ontological Mappings (SSSOM) is a community-driven standard designed to facilitate the exchange and integration of semantic entity mappings. As data interoperability becomes increasingly crucial across various domains, SSSOM provides a standardized format to share mappings, enabling researchers and developers to ...
  3. mapping-commons.github.io

    How to create an SSSOM mapping set from scratch. SSSOM mapping sets can be created as part of automated processes, like ontology matchers, or manually by ontology curators. While there is overlap, it makes sense to look at both cases separately. To remind yourself why you should build SSSOM mapping sets in the first place, please refer to the FAQ.
  4. mapping-commons.github.io

    The Simple Standard for Sharing Ontology Mappings (SSSOM) addresses these problems by defining a catalog of metadata terms to describe mappings. Both individual mappings and sets of mappings can be described, enabling provenance and metadata to be captured on multiple levels. SSSOM interoperates with existing methods for the specification of ...
  5. mapping-commons.github.io

    This document is the official specification for the SSSOM standard. It is divided in two sections covering the two different components of the standard: the specification for the data model, to manipulate SSSOM mappings and mapping sets in your programs; the specification for the serialisation formats, to read, write, and exchange SSSOM mapping ...
  6. mapping-commons.github.io

    A Simple Standard for Ontological Mappings 2024: A quick guide for getting started with publishing better entity mappings (RDA's 23rd plenary) November 13 th, 2024, hybrid; ... Synergizing Simple Standard for Sharing Ontology Mappings (SSSOM) and the Observational Health Data Sciences and Informatics (OHDSI) 3rd July 2023, https://www.ohdsi ...
  7. mapping-commons.github.io

    The sssom:NoTermFound value MUST NOT be used in any other slot than subject_id or object_id. The meaning of the NOT predicate modifier in a mapping that refers to sssom:NoTermFound is unspecified. When computing cardinality values (to fill the mapping_cardinality slot), mappings that refer to sssom:NoTermFound MUST be ignored. Non-standard slots
  8. mapping-commons.github.io

    A Simple Standard for Sharing Ontology Mappings (SSSOM) Overview Initializing search GitHub A Simple Standard for Sharing Ontology Mappings (SSSOM) ... Mapping curation with SSSOM; Are these two entities the same? A guide.. An important tutorial that explains that it is not directly possible to determine if two things are the same across ...
  9. mapping-commons.github.io

    A (SSSOM) mapping server is a repository for mappings that enables the browsing of existing mappings, exposing all (or some relevant subset of) SSSOM metadata as search facets. In that sense, it should be considered complementary, as it enables the search for accurate mappings from a specific term or set of terms, something that goes beyond ...
  10. mapping-commons.github.io

    In an ideal world, all mappings have some kind of confidence associated with them. confidence scores should be read as "the strength of evidence provided in this record/table row (i.e mapping justification) leads us to believe the mapping (e.g. OMOP:44499396 --[skos:broadMatch]--> OMOP:4028717) is correct with 90% confidence.
  11. mapping-commons.github.io

    A Simple Standard for Sharing Ontology Mappings (SSSOM) Om2022 Initializing search GitHub A Simple Standard for Sharing Ontology Mappings (SSSOM) ... Abstract: The Simple Standard for Ontological Mappings (SSSOM) was first published in December 2021 (v. 0.9). After a number of revisions prompted by community feedback, we have published version ...
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