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  1. Only showing results from pubmed.ncbi.nlm.nih.gov

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  2. pubmed.ncbi.nlm.nih.gov

    A Simple Standard for Sharing Ontological Mappings (SSSOM) Database (Oxford). 2022 May 25;2022:baac035. doi: 10.1093/database/baac035. ... We have developed the Simple Standard for Sharing Ontological Mappings (SSSOM) which addresses these problems by: (i) Introducing a machine-readable and extensible vocabulary to describe metadata that makes ...
  3. pubmed.ncbi.nlm.nih.gov

    Dec 19, 2024The process includes the following steps: identifying concepts, clustering similar concepts and constructing mappings between the clusters using the Simple Standard for Sharing Ontological Mappings (SSSOM) and Resource Description Framework (RDF), and enabling the creation of reusable mappings.
  4. pubmed.ncbi.nlm.nih.gov

    Oct 3, 2023To achieve this goal, the TG utilized the Simple Standard for Sharing Ontology Mappings (SSSOM) to create a comprehensive mapping of DwC keys to MIxS keys. This mapping, combined with the development of the MIxS-DwC extension, enables the incorporation of MIxS core terms into DwC-compliant metadata records, facilitating seamless data exchange ...
  5. pubmed.ncbi.nlm.nih.gov

    Creating mappings between concepts in different ontologies is a critical step in facilitating data integration. In recent years, researchers have developed many elaborate algorithms that use graph structure, background knowledge, machine learning and other techniques to generate mappings between ont …
  6. pubmed.ncbi.nlm.nih.gov

    Ten simple rules for creating reusable pathway models for computational analysis and visualization PLoS Comput Biol. 2021 Aug 19 ... 731075 to MM, CTE; EJP-RD: 825575 to FE, WS, CTE; FNS-Cloud: 863059 to SLC, CTE; EU-ToxRisk: 681002 to MM, CTE; NanoCommons: 731032 to ELW, LAW], ZonMw [10430012010015 to MK, SLC, LJD, FE, FH, NP, ELW, CTE] and ...
  7. pubmed.ncbi.nlm.nih.gov

    Objective: To devise an automated approach for integrating federated database information using database ontologies constructed from their extended metadata. Background: One challenge of database federation is that the granularity of representation of equivalent data varies across systems. Dealing effectively with this problem is analogous to dealing with precoordinated vs. postcoordinated ...
  8. pubmed.ncbi.nlm.nih.gov

    Ten simple rules to make your publication look better. Ten simple rules to make your publication look better PLoS Comput Biol. 2021 May 20;17(5): e1008938. ... (project number 10430012010015), FE and CE received funding from EJP-RD (European Union's Horizon 2020 research and innovation programme N°825575) The funders had no role in study ...
  9. pubmed.ncbi.nlm.nih.gov

    RDF has established in the last years as the language for describing, publishing and sharing biomedical resources. Following this trend, a great amount of RDF-based data sources, as well as ontologies, have appeared. ... In this paper, we present a general purpose ontology mapping format, totally independent from the homogenization approach to ...
  10. pubmed.ncbi.nlm.nih.gov

    It enables data sharing and users' collaboration in an open and interactive manner. Conclusion: In this project, we develop a service oriented architecture for online disease mapping that is distributed, loosely coupled, and interoperable. An implementation of this architecture has been applied to the New Brunswick and Maine infectious disease ...

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